Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs76989448 | chr5:81308543 | C/T | 9.46E-5 | 487 | 15.9 | 16.33 | 17.97 | KM Plot |
| THCA | rs76990548 | chr14:59768101 | G/A | 1.38E-8 | 488 | 16.37 | 13.5 | 5.45 | KM Plot |
| THCA | rs76991124 | chr2:29026658 | A/G | 0.000158 | 489 | 15.33 | 17.93 | 14.3 | KM Plot |
| THCA | rs770190 | chr9:15861571 | C/T | 0.000155 | 489 | 8.95 | 16.32 | 15.83 | KM Plot |
| THCA | rs770193 | chr9:15862959 | C/G | 5.45E-5 | 490 | 8.95 | 16.47 | 15.87 | KM Plot |
| THCA | rs770196 | chr9:15864506 | C/G | 5.59E-5 | 487 | 7.3 | 16.63 | 15.83 | KM Plot |
| THCA | rs770197 | chr9:15866367 | C/G | 0.000207 | 488 | 8.95 | 16.32 | 15.75 | KM Plot |
| THCA | rs77025220 | chr7:29819335 | C/T | 4.15E-5 | 487 | 16.07 | 15.78 | 12.83 | KM Plot |
| THCA | rs77026036 | chr3:56536587 | A/G | 5.77E-5 | 488 | 16.63 | 13.7 | 8.97 | KM Plot |
| THCA | rs77035666 | chr19:43575905 | C/T | 0.000246 | 486 | 15.32 | 18.93 | 10.08 | KM Plot |
| THCA | rs7704657 | chr5:140978272 | C/A | 5.14E-5 | 479 | 16.22 | 15.77 | 21.33 | KM Plot |
| THCA | rs77047728 | chr1:91739576 | A/G | 8.65E-6 | 484 | 15.68 | 17.03 | 17.77 | KM Plot |
| THCA | rs77058970 | chr2:48049790 | C/T | 1.14E-7 | 487 | 15.3 | 17.93 | 8.27 | KM Plot |
| THCA | rs77129531 | chr2:48115166 | T/G | 4.9E-8 | 490 | 15.2 | 18.9 | 8.27 | KM Plot |
| THCA | rs77131263 | chr7:29823181 | G/A | 4.14E-5 | 488 | 16.07 | 15.17 | 12.83 | KM Plot |